The foundation set up to honor John Travolta's late son donated 10 percent of its funds to Scientology last year, RadarOnline.com can report.

The 16-year-old died after hitting his head during a seizure in the Bahamas in 2009.  His parents John Travolta and Kelly Preston set up a foundation in his name -- the Jett Travolta Foundation - and has been donating to worthy causes ever since.

The non-profit has given away approximately $56,000 since it was set up, Showbiz411 reports.